- Basic information
- CohesinDB ID: CDBP00414383
- Locus: chr21-20216202-20216455
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Data sourse: GSE25021, GSE143937, ENCSR879KXD, ENCSR000BKV
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Cell type: K-562, MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: False
- Compartment:
17% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 81%,
"9_Het": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CEBPG, POU2F2, REST, TOP2A, RAD21, POU4F2, GRHL3, XBP1, FOXA1, SMC3, CTCF, HOXB13, BCL11A, STAG1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene:
- Related loop:
chr21:19375000-19400000~~chr21:20200000-20225000,
chr21:20000000-20025000~~chr21:20200000-20225000,
chr21:20075000-20100000~~chr21:20200000-20225000,
chr21:20100000-20125000~~chr21:20200000-20225000,
chr21:20200000-20225000~~chr21:20300000-20325000,
chr21:20200000-20225000~~chr21:20400000-20425000,
chr21:20200000-20225000~~chr21:20425000-20450000,
chr21:20200000-20225000~~chr21:20500000-20525000,
chr21:20200000-20225000~~chr21:20550000-20575000,
chr21:20200000-20225000~~chr21:20950000-20975000,