- Basic information
- CohesinDB ID: CDBP00414385
- Locus: chr21-20222912-20223226
-
Data sourse: GSE111913, GSE67783
-
Cell type: RT-112, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SMC1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
17% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 90%,
"9_Het": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RELA, ZNF384, MYC, PBX4, ARNT, ZBTB48, SRF, ZBTB33, HOXC5, ERG
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene:
- Related loop:
chr21:19375000-19400000~~chr21:20200000-20225000,
chr21:19375000-19400000~~chr21:20225000-20250000,
chr21:20000000-20025000~~chr21:20200000-20225000,
chr21:20000000-20025000~~chr21:20225000-20250000,
chr21:20075000-20100000~~chr21:20200000-20225000,
chr21:20100000-20125000~~chr21:20200000-20225000,
chr21:20200000-20225000~~chr21:20300000-20325000,
chr21:20200000-20225000~~chr21:20400000-20425000,
chr21:20200000-20225000~~chr21:20425000-20450000,
chr21:20200000-20225000~~chr21:20500000-20525000,
chr21:20200000-20225000~~chr21:20550000-20575000,
chr21:20200000-20225000~~chr21:20950000-20975000,
chr21:20225000-20250000~~chr21:20550000-20575000,
chr21:20225000-20250000~~chr21:20625000-20650000,