- Basic information
- CohesinDB ID: CDBP00414388
- Locus: chr21-20241639-20241915
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Data sourse: GSE67783, ENCSR153HNT
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Cell type: K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
17% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 60%,
"9_Het": 38%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, NFIA, CBX1, ZNF316, POU5F1, MEIS1, TOP2A, ZFX, POU4F2, XBP1, DUX4, ERG, RELA, MYC, NFIC, ZBTB5, NFIB, HIF1A, BATF3, TAL1, TRIM28, MYB, TFAP2C, EZH2, LMO2, ESR1, C11orf30, ZNF334, BCL11A, AR, GATA2, NOTCH3, BRD4, NCOR2, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops