- Basic information
- CohesinDB ID: CDBP00414395
- Locus: chr21-20272707-20273261
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Data sourse: ENCSR000BLD, GSE126634, GSE105028, GSE152721, GSE97394
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Cell type: H1-hESC, HUES64, HAP1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
23% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 77%,
"7_Enh": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, NANOG, PGR, CHD8, HDAC1, POU5F1, CBX1, TOP2A, SOX2, MEIS2, CTBP1, CC2D1A, FOXA1, PBX2, HOXB13, SMARCC1, ERG, YY1, RELA, LYL1, AHR, SMARCA4, ARID1B, CHD7, RAD21, PBX4, HIF1A, GRHL3, GABPA, TAL1, CBFA2T3, TP63, MAX, PRDM14, IKZF1, ZNF143, RCOR1, NR2F6, SMARCE1, ZNF750, ESRRA, CEBPB, GFI1B, TEAD1, TRIM28, MYB, ETV1, PIAS1, LMO2, PKNOX1, GRHL2, ZFP91, KLF16, BRD2, TCF12, EP300, TFAP2A, E4F1, AR, DPF2, HDAC2, GATA2, SOX6, RNF2, NCOR1, BRD4, JUND, BCOR, TEAD4, EHMT2, TFAP2C
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops