- Basic information
- CohesinDB ID: CDBP00414399
- Locus: chr21-20309047-20309375
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Data sourse: GSE103477, GSE126634
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Cell type: THP-1, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
23% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 90%,
"9_Het": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, CEBPA, FOXA2, SOX2, NME2, XBP1, FOXA1, MEF2C, CDK9, ERG, RELA, RAD21, PRDM1, ARNT, GRHL3, STAT3, NKX3-1, CDK8, VDR, CEBPG, JMJD1C, CEBPB, PDX1, TRIM28, MYB, LMO2, SPI1, MNT, AR, TRIM24, FLI1, HOXA9, BRD4, KMT2B, MLLT1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops