- Basic information
- CohesinDB ID: CDBP00414409
- Locus: chr21-20404914-20405410
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Data sourse: ENCSR000BLD, ENCSR000BKV, GSE105028, ENCSR000ECE, ENCSR198ZYJ, GSE138105, GSE25021, GSE97394
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Cell type: MCF-7, H1-hESC, Neurons-H1, SLK, H9-hESC, K-562, HUES64
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
23% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 82%,
"9_Het": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, ARNTL, REST, CHD8, EGLN2, TOP2A, RAD21, GTF2B, NOTCH3, HIF1A, STAT1, TBX5, GABPA, SMC3, CTCF, ZNF143, EP300, STAG1, ERG, EED
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 8
- Related genes and loops