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Basic information

CohesinDB ID: CDBP00414410

Locus: chr21-20424901-20426146

Data sourse: ENCSR000BLD, GSE143937, GSE67783, ENCSR000BKV, ENCSR000FAD, GSE138405, GSE86191, GSE111913, ENCSR000BLY, GSE105028, ENCSR000ECE, GSE25021, GSE108869, GSE97394, GSE38411

Cell type: MCF-7, H1-hESC, Hela-Kyoto, HCT-116, Hep-G2, HeLa-S3, HUES64, RT-112, K-562, SK-N-SH, BCBL-1, HSPC, H9-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 5% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.856

Subunit: SA1,Rad21,SMC1,SA2,SMC3

CTCF binding site: CTCF CTCF motif: True

Genomic location: TSS,TES

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 23% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 69%, "9_Het": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RELA, SMC1A, RAD21, ZBTB48, CTCF

Target gene symbol (double-evidenced CRMs): NCAM2

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 18

Related genes and loops

Related gene: ENSG00000154654,

eachgene

Deatailed information for cohesin site CDBP00414410