Browse_each

Basic information

CohesinDB ID: CDBP00414413

Locus: chr21-20450670-20451373

Data sourse: ENCSR000BTU, GSE67783, ENCSR000EDE, GSE68388, GSE138105, GSE25021

Cell type: MCF-7, SLK, Ishikawa, HeLa-S3, HSPC, HuCC-T1

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.933

Subunit: SA1,Rad21,SMC1

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 23% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 91%, "9_Het": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: FOXO1, PGR, PPARG, FOXA2, ZFX, ZBTB48, SMAD3, DUX4, FOXA1, HOXC5, RELA, CREBBP, JUNB, MYC, GATA4, SMARCA4, RAD21, GRHL3, PBX4, DAXX, HIF1A, NKX2-1, PRDM9, GABPA, BATF3, NRIP1, FOS, TEAD1, SNAI2, STAG1, NR1H2, SETDB1, JUN, CTCF, TCF12, BCL11A, SOX9, PAX8, GATA2, NCOR1, NOTCH3, BRD4, JUND, TEAD4, BRCA1, PDX1, FOSL2

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 5

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00414413