- Basic information
- CohesinDB ID: CDBP00414418
- Locus: chr21-20507001-20508348
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Data sourse: GSE206145-NatGen2015, GSE67783, GSE86191
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Cell type: Fibroblast, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
25% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 72%,
"9_Het": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, TRP47, POU2F2, CHD8, SMC1A, TBL1X, ZSCAN5D, MYCN, POU5F1, KDM4C, ZFX, CRY1, XBP1, ZBTB48, WT1, ZSCAN5A, TET2, ZNF300, ERG, RELA, ATF3, SP140, GRHL3, ARNT, GATA3, PRDM9, GABPA, STAT3, NRIP1, SRSF3, NR2F1, ESR1, TP53, CTCF, ARRB1, GSPT2, AR, PAX8, HSF1, NOTCH3, BRD4, MAZ, AATF, SMC3, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 17
- Related genes and loops