Deatailed information for cohesin site CDBP00414421
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00414421
- Locus: chr21-20526014-20526268
- Data sourse: GSE62063
- Cell type: Ramos
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL
- CTCF binding site: non-CTCF CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
- Compartment: 25% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 98%,
"9_Het": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
- Related loop: chr21:19300000-19325000~~chr21:20525000-20550000, chr21:19975000-20000000~~chr21:20525000-20550000, chr21:20025000-20050000~~chr21:20525000-20550000, chr21:20175000-20200000~~chr21:20525000-20550000, chr21:20200000-20225000~~chr21:20500000-20525000, chr21:20300000-20325000~~chr21:20525000-20550000, chr21:20425000-20450000~~chr21:20525000-20550000, chr21:20500000-20525000~~chr21:20850000-20875000, chr21:20500000-20525000~~chr21:20875000-20900000, chr21:20500000-20525000~~chr21:22275000-22300000, chr21:20525000-20550000~~chr21:20625000-20650000, chr21:20525000-20550000~~chr21:20675000-20700000, chr21:20525000-20550000~~chr21:20750000-20775000, chr21:20525000-20550000~~chr21:20775000-20800000,
Tools:
- Assay
