- Basic information
- CohesinDB ID: CDBP00414424
- Locus: chr21-20545010-20545367
-
Data sourse: GSE206145-NatGen2015, GSE67783
-
Cell type: Fibroblast, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SA2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
25% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 84%,
"9_Het": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, MEIS2, XBP1, ZBTB48, PBX2, HOXB13, ERG, YY1, RELA, OGG1, SMARCA4, ARNT, HIF1A, GABPA, ARNTL, NCOA3, TRIM28, EZH2, OCA2, BCL11A, AR, GATA2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops
- Related gene:
- Related loop:
chr21:18275000-18300000~~chr21:20550000-20575000,
chr21:18500000-18525000~~chr21:20550000-20575000,
chr21:18950000-18975000~~chr21:20550000-20575000,
chr21:19250000-19275000~~chr21:20550000-20575000,
chr21:19300000-19325000~~chr21:20525000-20550000,
chr21:19500000-19525000~~chr21:20550000-20575000,
chr21:19600000-19625000~~chr21:20550000-20575000,
chr21:19725000-19750000~~chr21:20550000-20575000,
chr21:19900000-19925000~~chr21:20550000-20575000,
chr21:19975000-20000000~~chr21:20525000-20550000,
chr21:20025000-20050000~~chr21:20525000-20550000,
chr21:20025000-20050000~~chr21:20550000-20575000,
chr21:20175000-20200000~~chr21:20525000-20550000,
chr21:20200000-20225000~~chr21:20550000-20575000,
chr21:20225000-20250000~~chr21:20550000-20575000,
chr21:20300000-20325000~~chr21:20525000-20550000,
chr21:20350000-20375000~~chr21:20550000-20575000,
chr21:20425000-20450000~~chr21:20525000-20550000,
chr21:20425000-20450000~~chr21:20550000-20575000,
chr21:20525000-20550000~~chr21:20625000-20650000,
chr21:20525000-20550000~~chr21:20675000-20700000,
chr21:20525000-20550000~~chr21:20750000-20775000,
chr21:20525000-20550000~~chr21:20775000-20800000,
chr21:20550000-20575000~~chr21:20775000-20800000,
chr21:20550000-20575000~~chr21:20875000-20900000,