- Basic information
- CohesinDB ID: CDBP00414437
- Locus: chr21-20646374-20646879
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
25% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"9_Het": 48%,
"15_Quies": 46%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, CHD8, MYCN, TOP2A, ZFX, XBP1, ZBTB48, WT1, TET2, ERG, RELA, MYC, SP140, DNMT3B, NCOA3, ESR1, OCA2, CTCF, JUN, HSF1, BRD4, SMC3, STAG1, EED
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops
- Related gene:
- Related loop:
chr21:20000000-20025000~~chr21:20625000-20650000,
chr21:20175000-20200000~~chr21:20625000-20650000,
chr21:20225000-20250000~~chr21:20625000-20650000,
chr21:20275000-20300000~~chr21:20625000-20650000,
chr21:20425000-20450000~~chr21:20650000-20675000,
chr21:20525000-20550000~~chr21:20625000-20650000,
chr21:20625000-20650000~~chr21:20775000-20800000,
chr21:20625000-20650000~~chr21:20875000-20900000,
chr21:20625000-20650000~~chr21:21600000-21625000,
chr21:20650000-20675000~~chr21:20775000-20800000,
chr21:20650000-20675000~~chr21:20800000-20825000,
chr21:20650000-20675000~~chr21:20875000-20900000,