- Basic information
- CohesinDB ID: CDBP00414438
- Locus: chr21-20660943-20662978
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Data sourse: ENCSR000BLD, GSE126634, GSE105028, GSE152721, GSE97394, GSE64758
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Cell type: H1-hESC, HUES64, HAP1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: NIPBL,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
25% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 64%,
"7_Enh": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NANOG, CHD8, ZNF207, POU5F1, RBBP5, CHD2, SOX2, POU4F2, SMAD3, KDM1A, YY1, ASCL1, SMARCA4, BRG1, EOMES, CHD7, RAD21, ARNT, PRDM1, MORC2, ATF2, PAX5, CHD1, NR3C1, KLF4, CREB1, TP53, T, TCF12, MAFK, SP1, EP300, NIPBL, BCL11A, TAF1, HDAC2, SIX2, ASH2L, SCRT1, JUND, FOXP1, TEAD4
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 36
- Related genes and loops