- Basic information
- CohesinDB ID: CDBP00414453
- Locus: chr21-20790128-20790563
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Data sourse: GSE105028, GSE97394, GSE64758
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Cell type: H1-hESC, HUES64, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: NIPBL,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
25% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 71%,
"7_Enh": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, NANOG, PPARG, ZNF207, POU5F1, CHD2, SOX2, SMAD3, TWIST1, KDM1A, YY1, JUNB, MYC, BRG1, EOMES, CHD7, LHX2, PBX4, RAD21, ARNT, MORC2, ATF2, STAT3, MAX, UBN1, FOS, ZNF143, LEF1, MED1, NR3C1, CEBPB, KLF4, CREB1, ESR1, PHOX2B, JUN, T, TCF12, EP300, SP1, NIPBL, BCL11A, AR, HDAC2, GATA2, ZNF777, ASH2L, BRD4, CTBP2, JUND, BCOR, FOXP1, TEAD4, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:18525000-18550000~~chr21:20775000-20800000,
chr21:20175000-20200000~~chr21:20775000-20800000,
chr21:20300000-20325000~~chr21:20775000-20800000,
chr21:20525000-20550000~~chr21:20775000-20800000,
chr21:20550000-20575000~~chr21:20775000-20800000,
chr21:20625000-20650000~~chr21:20775000-20800000,
chr21:20650000-20675000~~chr21:20775000-20800000,
chr21:20775000-20800000~~chr21:20875000-20900000,
chr21:20775000-20800000~~chr21:20925000-20950000,
chr21:20775000-20800000~~chr21:20950000-20975000,