- Basic information
- CohesinDB ID: CDBP00414458
- Locus: chr21-20812297-20812885
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Data sourse: GSE25021, GSE67783
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Cell type: MCF-7, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
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CTCF binding site: non-CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
25% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 80%,
"9_Het": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NCOA2, CBFA2T2, CHD8, ZNF263, CREM, EBF1, MEIS2, CTBP1, XBP1, POU4F2, ZFX, FOXA1, ZNF300, RELA, CREBBP, RAD21, ARNT, HIF1A, GRHL3, TAL1, CBFA2T3, NRIP1, GATA1, FOS, NR3C1, CEBPB, CREB1, SMAD1, EZH2, ESR1, ZNF334, SETDB1, CTCF, HNF4A, PAX3-FOXO1, AR, MYNN, NOTCH3, E2F1, TEAD4, ATF1, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 12
- Related genes and loops