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Basic information

CohesinDB ID: CDBP00414464

Locus: chr21-20875028-20876408

Data sourse: ENCSR000BLD, GSE206145-GSE177045, ENCSR230ZWH, GSE72082, GSE126634, ENCSR000BLY, ENCSR404BPV, GSE105028, GSE103477, GSE25021, GSE108869, GSE115602, ENCSR917QNE, ENCSR000BTU, GSE67783, GSE86191, GSE115250, GSE138405, GSE76893, GSE101921, GSE152721, ENCSR198ZYJ, GSE112028, GSE130135, GSE116344, ENCSR703TNG, GSE106870, GSE138105, GSE145327, ENCSR000ECE, GSE97394, ENCSR000BTQ, ENCSR000EDE, GSE126990, ENCSR000ECS

Cell type: RH4, SLK, CVB-hiPSC, CVI-hiPSC, Liver, TC-32, H9-hESC, Ishikawa, HeLa-S3, H1-hESC, SK-N-SH, HeLa-Tet-On, HAP1, THP-1, HUES64, MCF-7, Hela-Kyoto, HCT-116, MCF-10A, HEK293T, Neurons-H1, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 16% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.756

Subunit: SA1,Rad21,SMC1,SA2,SMC3

CTCF binding site: CTCF CTCF motif: True

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 25% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 93%, "9_Het": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: ZBTB48, SP140

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 24

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00414464