- Basic information
- CohesinDB ID: CDBP00414465
- Locus: chr21-20881881-20883476
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE104888, ENCSR230ZWH, ENCSR000FAD, GSE72082, GSE126634, GSE116868, ENCSR000EGW, ENCSR000BLY, ENCSR404BPV, ENCSR150EFU, GSE105028, GSE121355, GSE103477, GSE111537, GSE131606, ENCSR330ELC, ENCSR000EDW, GSE108869, ENCSR000BUC, ENCSR917QNE, ENCSR000EFJ, ENCSR000BTU, GSE25021, ENCSR000DZP, ENCSR000EAC, GSE143937, ENCSR000BKV, GSE115250, GSE122299, GSE138405, GSE93080, GSE76893, GSE101921, GSE152721, GSE51234, GSE206145-NatGen2015, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR703TNG, GSE106870, GSE116344, GSE138105, GSE145327, GSE94872, ENCSR000EEG, GSE115248, ENCSR193NSH, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE85526, ENCSR000ECE, ENCSR247LSH, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, ENCSR748MVX, GSE206145, GSE97394, ENCSR217ELF, ENCSR000BTQ, GSE105004, ENCSR167MTG, ENCSR956LGB, GSE38395, GSE55407, GSE131956, GSE110061, GSE129526, ENCSR000HPG, GSE155324, GSE38411, ENCSR335RKQ, ENCSR000EDE, ENCSR153HNT, GSE68388, GSE126990, GSE50893, ENCSR000ECS, GSE131577
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Cell type: MDM, RH4, GM2610, SLK, CVB-hiPSC, GM19240, CVI-hiPSC, Liver, GP5d, TC-32, HuCC-T1, H9-hESC, RPE, GM2630, Fibroblast, HEKn, Ishikawa, Kelly, HeLa-S3, hLCL, GM2255, IMR-90, BCBL-1, K-562, GM18486, DKO, GM18526, H1-hESC, SNYDER, GM18505, MB157, Lymphoblast, GM12878, GM12891, GM2588, GBM39, SK-N-SH, GM19239, CNCCs-H9ESC, GM19193, HeLa-Tet-On, HAP1, GM19099, HUES64, MCF-7, GM12892, THP-1, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, Neurons-H1, A-549, HUVEC, HCAEC, GM19238, HeLa, CNCC-WT33iPSC, TC-71, OCI-AML-3, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 47% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.289
- Subunit: SA1,Rad21,SMC1,SMC3ac,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
25% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 83%,
"7_Enh": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: BRD4, PBX2, MEIS2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 21
- Related genes and loops
- Related gene:
- Related loop:
chr21:17925000-17950000~~chr21:20875000-20900000,
chr21:18275000-18300000~~chr21:20875000-20900000,
chr21:18375000-18400000~~chr21:20875000-20900000,
chr21:18475000-18500000~~chr21:20875000-20900000,
chr21:18500000-18525000~~chr21:20875000-20900000,
chr21:18950000-18975000~~chr21:20875000-20900000,
chr21:19300000-19325000~~chr21:20875000-20900000,
chr21:19325000-19350000~~chr21:20875000-20900000,
chr21:19500000-19525000~~chr21:20875000-20900000,
chr21:19600000-19625000~~chr21:20875000-20900000,
chr21:19800000-19825000~~chr21:20875000-20900000,
chr21:19900000-19925000~~chr21:20875000-20900000,
chr21:19981264-19982913~~chr21:20881660-20883574,
chr21:20025000-20050000~~chr21:20875000-20900000,
chr21:20125000-20150000~~chr21:20875000-20900000,
chr21:20250000-20275000~~chr21:20875000-20900000,
chr21:20300000-20325000~~chr21:20875000-20900000,
chr21:20325000-20350000~~chr21:20875000-20900000,
chr21:20425000-20450000~~chr21:20875000-20900000,
chr21:20450000-20475000~~chr21:20875000-20900000,
chr21:20500000-20525000~~chr21:20875000-20900000,
chr21:20550000-20575000~~chr21:20875000-20900000,
chr21:20625000-20650000~~chr21:20875000-20900000,
chr21:20650000-20675000~~chr21:20875000-20900000,
chr21:20738603-20740749~~chr21:20881609-20884286,
chr21:20738788-20740284~~chr21:20881848-20883515,
chr21:20738816-20740295~~chr21:20881653-20883733,
chr21:20775000-20800000~~chr21:20875000-20900000,