- Basic information
- CohesinDB ID: CDBP00414467
- Locus: chr21-20899444-20899510
-
Data sourse: GSE120943
-
Cell type: Monocytes
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
25% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 88%,
"9_Het": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
- Related loop:
chr21:17925000-17950000~~chr21:20875000-20900000,
chr21:18275000-18300000~~chr21:20875000-20900000,
chr21:18375000-18400000~~chr21:20875000-20900000,
chr21:18475000-18500000~~chr21:20875000-20900000,
chr21:18500000-18525000~~chr21:20875000-20900000,
chr21:18950000-18975000~~chr21:20875000-20900000,
chr21:19300000-19325000~~chr21:20875000-20900000,
chr21:19325000-19350000~~chr21:20875000-20900000,
chr21:19500000-19525000~~chr21:20875000-20900000,
chr21:19600000-19625000~~chr21:20875000-20900000,
chr21:19775000-19800000~~chr21:20900000-20925000,
chr21:19800000-19825000~~chr21:20875000-20900000,
chr21:19900000-19925000~~chr21:20875000-20900000,
chr21:20025000-20050000~~chr21:20875000-20900000,
chr21:20050000-20075000~~chr21:20900000-20925000,
chr21:20125000-20150000~~chr21:20875000-20900000,
chr21:20250000-20275000~~chr21:20875000-20900000,
chr21:20300000-20325000~~chr21:20875000-20900000,
chr21:20325000-20350000~~chr21:20875000-20900000,
chr21:20425000-20450000~~chr21:20875000-20900000,
chr21:20450000-20475000~~chr21:20875000-20900000,
chr21:20500000-20525000~~chr21:20875000-20900000,
chr21:20550000-20575000~~chr21:20875000-20900000,
chr21:20625000-20650000~~chr21:20875000-20900000,
chr21:20650000-20675000~~chr21:20875000-20900000,
chr21:20775000-20800000~~chr21:20875000-20900000,