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Basic information

CohesinDB ID: CDBP00414468

Locus: chr21-20899965-20900238

Data sourse: GSE206145-GSE177045, GSE120943, GSE98367

Cell type: MCF-7, Monocytes, Macrophage

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: Mau2,SMC1

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 25% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 91%, "9_Het": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: PGR, NANOG, NME2, FOXA1, HOXB13, HNF4G, ERG, RELA, NEUROD1, TOP1, ARNT, OTX2, NKX3-1, TLE3, NR3C1, ESRRA, CREB1, PIAS1, ESR1, PHOX2B, BAF155, AR, GATA2, ARID1A, FLI1, BRD4, E2F1, AHR

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 1

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00414468