- Basic information
- CohesinDB ID: CDBP00414478
- Locus: chr21-20976282-20976579
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
25% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 98%,
"14_ReprPCWk": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ATF2, ATF7, ZNF316
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 9
- Related genes and loops
- Related gene:
- Related loop:
chr21:17675000-17700000~~chr21:20950000-20975000,
chr21:17925000-17950000~~chr21:20950000-20975000,
chr21:18275000-18300000~~chr21:20950000-20975000,
chr21:18475000-18500000~~chr21:20950000-20975000,
chr21:18500000-18525000~~chr21:20950000-20975000,
chr21:18500000-18525000~~chr21:20975000-21000000,
chr21:18525000-18550000~~chr21:20950000-20975000,
chr21:18900000-18925000~~chr21:20950000-20975000,
chr21:19600000-19625000~~chr21:20950000-20975000,
chr21:20025000-20050000~~chr21:20950000-20975000,
chr21:20200000-20225000~~chr21:20950000-20975000,
chr21:20425000-20450000~~chr21:20950000-20975000,
chr21:20425000-20450000~~chr21:20975000-21000000,
chr21:20775000-20800000~~chr21:20950000-20975000,
chr21:20825000-20850000~~chr21:20975000-21000000,
chr21:20975000-21000000~~chr21:22100000-22125000,