- Basic information
- CohesinDB ID: CDBP00414481
- Locus: chr21-20995322-20995464
-
Data sourse: GSE120943, GSE98367
-
Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
25% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"14_ReprPCWk": 54%,
"15_Quies": 45%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000154654,
- Related loop:
chr21:18500000-18525000~~chr21:20975000-21000000,
chr21:20425000-20450000~~chr21:20975000-21000000,
chr21:20825000-20850000~~chr21:20975000-21000000,
chr21:20975000-21000000~~chr21:22100000-22125000,
chr21:20997997-21000834~~chr21:21101368-21102780,
chr21:20997997-21000834~~chr21:21921038-21922969,
chr21:20998668-21000692~~chr21:21101352-21103020,
chr21:20998668-21000692~~chr21:21687936-21689865,
chr21:20998668-21000692~~chr21:21920963-21923078,
chr21:20998691-21000777~~chr21:21920863-21923107,
chr21:20998732-21000680~~chr21:21688116-21689848,
chr21:20998885-21000797~~chr21:21920936-21923160,
chr21:20998901-21000721~~chr21:21688167-21689840,
chr21:20998915-21000754~~chr21:21688092-21689865,
chr21:20998922-21001330~~chr21:21372954-21374952,
chr21:20998922-21001330~~chr21:21687914-21690146,
chr21:20998922-21001330~~chr21:21920932-21923125,
chr21:20998952-21000882~~chr21:21687901-21690144,
chr21:20998995-21000797~~chr21:21688096-21689849,
chr21:20999019-21000705~~chr21:21101429-21102752,
chr21:20999019-21000705~~chr21:21688236-21689710,
chr21:20999019-21000835~~chr21:21688505-21689670,
chr21:20999033-21000971~~chr21:21921005-21922555,
chr21:20999047-21000467~~chr21:21101340-21102966,
chr21:20999048-21000699~~chr21:21101364-21102683,
chr21:20999048-21000699~~chr21:21920950-21923088,
chr21:20999061-21000675~~chr21:21101139-21102794,
chr21:20999120-21000650~~chr21:21688176-21689721,
chr21:20999150-21000700~~chr21:21921001-21922912,
chr21:21000000-21025000~~chr21:21100000-21125000,
chr21:21000000-21025000~~chr21:21150000-21175000,
chr21:21000000-21025000~~chr21:21200000-21225000,
chr21:21000000-21025000~~chr21:21275000-21300000,
chr21:21000000-21025000~~chr21:21300000-21325000,
chr21:21000000-21025000~~chr21:21325000-21350000,
chr21:21000000-21025000~~chr21:21350000-21375000,
chr21:21000000-21025000~~chr21:21375000-21400000,
chr21:21000000-21025000~~chr21:21650000-21675000,
chr21:21000000-21025000~~chr21:21675000-21700000,
chr21:21000000-21025000~~chr21:21750000-21775000,
chr21:21000000-21025000~~chr21:21900000-21925000,
chr21:21000000-21025000~~chr21:21925000-21950000,
chr21:21000000-21025000~~chr21:22100000-22125000,
chr21:21000000-21025000~~chr21:22775000-22800000,
chr21:21000000-21025000~~chr21:23150000-23175000,
chr21:21000000-21025000~~chr21:23375000-23400000,
chr21:21000000-21025000~~chr21:23400000-23425000,
chr21:21000000-21025000~~chr21:23675000-23700000,
chr21:21000000-21025000~~chr21:23950000-23975000,
chr21:21000000-21025000~~chr21:24500000-24525000,
chr21:21000000-21025000~~chr21:24875000-24900000,
chr21:21000000-21025000~~chr21:25000000-25025000,
chr21:21000000-21025000~~chr21:25025000-25050000,
chr21:21000000-21025000~~chr21:25300000-25325000,
chr21:21000000-21025000~~chr21:25325000-25350000,
chr21:21000000-21025000~~chr21:25375000-25400000,