- Basic information
- CohesinDB ID: CDBP00414484
- Locus: chr21-21003129-21004886
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Data sourse: ENCSR000BLD, ShirahigeLab-GSE177045, GSE104888, ENCSR230ZWH, ENCSR000FAD, GSE72082, GSE126634, GSE116868, GSE25021, ENCSR000EGW, ENCSR000BLY, ENCSR404BPV, GSE105028, GSE121355, GSE103477, GSE111537, GSE131606, ENCSR330ELC, ENCSR000EDW, GSE108869, ENCSR000BUC, ENCSR917QNE, ENCSR000EFJ, ENCSR000BTU, GSE115602, ENCSR000DZP, GSE143937, GSE93080, ENCSR000BKV, GSE115250, GSE122299, GSE138405, GSE76893, GSE101921, GSE135093, GSE152721, GSE120943, ENCSR198ZYJ, ShirahigeLab-NatGen2015, GSE112028, GSE130135, ENCSR703TNG, GSE106870, GSE116344, GSE138105, GSE145327, GSE94872, GSE118494, ENCSR000EEG, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, ShirahigeLab, ENCSR000ECE, GSE62063, ENCSR000BMY, ENCSR000EHX, GSE97394, GSE55407, ENCSR000BTQ, GSE105004, ENCSR167MTG, ENCSR944ZCT, GSE131956, GSE110061, GSE129526, ENCSR000HPG, GSE38411, ENCSR335RKQ, ENCSR054FKH, ENCSR000EDE, ENCSR153HNT, GSE68388, GSE126990, GSE50893, ENCSR000ECS, GSE131577
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Cell type: MDM, RH4, GM2610, SLK, CVB-hiPSC, GM19240, CVI-hiPSC, Liver, TC-32, HuCC-T1, H9-hESC, GM2630, Fibroblast, THP-1, Ishikawa, HeLa-S3, GM2255, IMR-90, BCBL-1, K-562, GM18486, DKO, GM18526, H1-hESC, SNYDER, Monocytes, MB157, GM12878, GM12891, GM2588, GBM39, SK-N-SH, GM19239, HeLa-Tet-On, GM19193, HAP1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, Neurons-H1, A-549, HUVEC, HCAEC, Ramos, GM19238, HeLa, TC-71, OCI-AML-3, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 43% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.356
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TSS,Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
27% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 73%,
"14_ReprPCWk": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, MEN1, FOXA1, ZNF485, PHOX2B, CTCF
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 16
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000154654,
- Related loop:
chr21:18500000-18525000~~chr21:20975000-21000000,
chr21:20425000-20450000~~chr21:20975000-21000000,
chr21:20825000-20850000~~chr21:20975000-21000000,
chr21:20975000-21000000~~chr21:22100000-22125000,
chr21:20997997-21000834~~chr21:21101368-21102780,
chr21:20997997-21000834~~chr21:21921038-21922969,
chr21:20998668-21000692~~chr21:21101352-21103020,
chr21:20998668-21000692~~chr21:21687936-21689865,
chr21:20998668-21000692~~chr21:21920963-21923078,
chr21:20998691-21000777~~chr21:21920863-21923107,
chr21:20998732-21000680~~chr21:21688116-21689848,
chr21:20998885-21000797~~chr21:21920936-21923160,
chr21:20998901-21000721~~chr21:21688167-21689840,
chr21:20998915-21000754~~chr21:21688092-21689865,
chr21:20998922-21001330~~chr21:21372954-21374952,
chr21:20998922-21001330~~chr21:21687914-21690146,
chr21:20998922-21001330~~chr21:21920932-21923125,
chr21:20998952-21000882~~chr21:21687901-21690144,
chr21:20998995-21000797~~chr21:21688096-21689849,
chr21:20999019-21000705~~chr21:21101429-21102752,
chr21:20999019-21000705~~chr21:21688236-21689710,
chr21:20999019-21000835~~chr21:21688505-21689670,
chr21:20999033-21000971~~chr21:21921005-21922555,
chr21:20999047-21000467~~chr21:21101340-21102966,
chr21:20999048-21000699~~chr21:21101364-21102683,
chr21:20999048-21000699~~chr21:21920950-21923088,
chr21:20999061-21000675~~chr21:21101139-21102794,
chr21:20999120-21000650~~chr21:21688176-21689721,
chr21:20999150-21000700~~chr21:21921001-21922912,
chr21:21000000-21025000~~chr21:21100000-21125000,
chr21:21000000-21025000~~chr21:21150000-21175000,
chr21:21000000-21025000~~chr21:21200000-21225000,
chr21:21000000-21025000~~chr21:21275000-21300000,
chr21:21000000-21025000~~chr21:21300000-21325000,
chr21:21000000-21025000~~chr21:21325000-21350000,
chr21:21000000-21025000~~chr21:21350000-21375000,
chr21:21000000-21025000~~chr21:21375000-21400000,
chr21:21000000-21025000~~chr21:21650000-21675000,
chr21:21000000-21025000~~chr21:21675000-21700000,
chr21:21000000-21025000~~chr21:21750000-21775000,
chr21:21000000-21025000~~chr21:21900000-21925000,
chr21:21000000-21025000~~chr21:21925000-21950000,
chr21:21000000-21025000~~chr21:22100000-22125000,
chr21:21000000-21025000~~chr21:22775000-22800000,
chr21:21000000-21025000~~chr21:23150000-23175000,
chr21:21000000-21025000~~chr21:23375000-23400000,
chr21:21000000-21025000~~chr21:23400000-23425000,
chr21:21000000-21025000~~chr21:23675000-23700000,
chr21:21000000-21025000~~chr21:23950000-23975000,
chr21:21000000-21025000~~chr21:24500000-24525000,
chr21:21000000-21025000~~chr21:24875000-24900000,
chr21:21000000-21025000~~chr21:25000000-25025000,
chr21:21000000-21025000~~chr21:25025000-25050000,
chr21:21000000-21025000~~chr21:25300000-25325000,
chr21:21000000-21025000~~chr21:25325000-25350000,
chr21:21000000-21025000~~chr21:25375000-25400000,
chr21:21003038-21004640~~chr21:21101289-21102786,
chr21:21003051-21004829~~chr21:21101340-21102914,
chr21:21003058-21004646~~chr21:21688144-21689874,
chr21:21003058-21004646~~chr21:21920972-21923111,
chr21:21003089-21004639~~chr21:21101203-21103013,
chr21:21003101-21004721~~chr21:21101174-21102946,
chr21:21003101-21004721~~chr21:21688167-21689840,
chr21:21003101-21004721~~chr21:21920938-21922813,
chr21:21003128-21004732~~chr21:21372936-21375055,
chr21:21003137-21004624~~chr21:21688096-21689849,
chr21:21003151-21004646~~chr21:21372959-21374950,
chr21:21003151-21004646~~chr21:21687901-21690144,
chr21:21003151-21004646~~chr21:21920910-21923131,
chr21:21003163-21004635~~chr21:21687914-21690146,
chr21:21003242-21004641~~chr21:21101303-21102752,
chr21:21003264-21004580~~chr21:21687914-21690120,
chr21:21003266-21004597~~chr21:21101164-21102785,
chr21:21003271-21004562~~chr21:21101398-21102732,
chr21:21003276-21004585~~chr21:21101357-21102787,
chr21:21003301-21004546~~chr21:21921038-21922969,