- Basic information
- CohesinDB ID: CDBP00414488
- Locus: chr21-21030291-21030686
-
Data sourse: GSE206145-GSE177045
-
Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
27% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 87%,
"5_TxWk": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: NFIA, PGR, SOX2, MEIS2, FOXA1, PBX2, MEN1, NFIC, CHD7, JMJD1C, TEAD1, TRIM28, ZNF217, ESR1, TP73, CTCF, TCF12, JUN, EP300, BAF155, DPF2, TRIM24, TEAD4, KMT2B, RBPJ, TFAP2C, NANOG, POU5F1, RUNX1T1, CTBP1, ZBTB48, ZNF205, MLLT3, HOXC5, ERG, MYC, SMARCA4, RAD21, GRHL3, GABPA, STAT3, IKZF1, NR3C1, ESRRA, CEBPB, KMT2A, CREB1, GRHL2, TRPS1, SPI1, KDM5A, HDAC2, GATA2, FLI1, NCOA2, RUNX1, CBX1, CEBPA, SIN3A, ZFX, POU4F2, SMARCC1, CREBBP, ZXDC, RUNX2, GR, ARNT, DAXX, PBX4, ZEB2, HMBOX1, FOXM1, FOS, CDK8, MED1, MYB, PIAS1, SMAD1, STAT5A, NIPBL, BCL11A, NR4A1, CTBP2, MBD2, TCF3, MLLT1, SKI, ZNF283, GTF2B, MEF2C, ZNF823, CDK9, HOXB13, RELA, JUNB, SP140, HIF1A, OTX2, GATA3, NRIP1, TLE3, CEBPG, NCOA3, KDM5B, TP53, PHOX2B, AR, EGLN2, BRD4, JUND, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 8
- Number of somatic mutations (non-coding): 0
- Related genes and loops