- Basic information
- CohesinDB ID: CDBP00414491
- Locus: chr21-21045765-21046419
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Data sourse: GSE138405, GSE126634
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Cell type: Hela-Kyoto, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
27% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 71%,
"7_Enh": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, NANOG, HDAC1, MTA3, POU5F1, MEIS1, ZNF207, MEIS2, SOX2, GTF2B, FOXA1, MLLT3, MEF2C, PBX2, HOXB13, KDM1A, ERG, RELA, HOXC5, NEUROD1, SMARCA4, CHD7, TOP1, PBX4, HIF1A, OTX2, GATA3, GABPA, PBX3, PAX5, GATA1, CDK8, MITF, IKZF1, VDR, NR3C1, ZNF592, CREB1, ZNF3, ESR1, EBF3, TRPS1, TCF12, USF1, SPI1, BAF155, BCL11A, SP1, AR, GATA6, EP300, DPF2, HDAC2, GATA2, ZBTB7A, SOX6, FLI1, NOTCH3, BRD4, JUND, E2F1, ATF1, MLLT1, AHR
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 8
- Number of somatic mutations (non-coding): 0
- Related genes and loops