- Basic information
- CohesinDB ID: CDBP00414500
- Locus: chr21-21077472-21078066
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Data sourse: GSE62063, GSE206145-GSE177045
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Cell type: MCF-7, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: NIPBL,Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
27% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 85%,
"5_TxWk": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: MAFG, CEBPA, TOP2A, SOX2, MAFF, FOXA1, HOXB13, ERG, BRG1, TOP1, RAD21, ARNT, HIF1A, OTX2, BATF3, GABPA, TAL1, NRIP1, ZNF10, CDK8, VDR, TLE3, NR3C1, CEBPB, JMJD1C, TEAD1, KMT2A, PIAS1, ESR1, C11orf30, PHOX2B, NUP98-HOXA9, MAFK, SPI1, BCL11A, BAF155, AR, GATA2, ARID1A, EGLN2, RBM25, NCOR1, BRD4, FOXP1, MLLT1, ZNF316
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 3
- Number of somatic mutations (non-coding): 0
- Related genes and loops