- Basic information
- CohesinDB ID: CDBP00414502
- Locus: chr21-21090443-21090681
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Data sourse: GSE138405, GSE55407
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Cell type: Hela-Kyoto, THP-1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
27% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 90%,
"7_Enh": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU5F1, SOX2, NME2, FOXA1, MEF2C, PBX2, HOXB13, RELA, MYC, RUNX2, RAD21, PRDM1, GRHL3, HIF1A, PRDM9, PAX5, MAX, SPIB, CDK8, CEBPG, CEBPB, NCOA3, ZNF334, SETDB1, CTCF, AR, GATA2, BRD4, MLLT1, ZNF316
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2
- Number of somatic mutations (non-coding): 0
- Related genes and loops