- Basic information
- CohesinDB ID: CDBP00414510
- Locus: chr21-21123099-21123338
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Data sourse: GSE105028, GSE67783
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Cell type: HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
27% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 91%,
"9_Het": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, MEF2B, XBP1, WT1, ZBTB48, DUX4, FOXA1, MLLT3, MEF2C, ZBTB33, HOXB13, SMARCC1, RELA, SP140, ARNT, HIF1A, ZNF143, CDK8, VDR, PIAS1, SETDB1, PHOX2B, AR, GATA2, EGLN2, TEAD4, ZNF316
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 1
- Number of somatic mutations (non-coding): 0
- Related genes and loops