- Basic information
- CohesinDB ID: CDBP00414514
- Locus: chr21-21155794-21156222
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Data sourse: GSE206145-NatGen2015
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Cell type: Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
27% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 91%,
"7_Enh": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, MYCN, SOX2, MTA2, FOXA1, RBFOX2, HOXB13, CREB3L1, ZBTB2, HDGF, ZNF384, SMARCC2, MYC, SMARCA4, ARID1B, GATA3, SMARCE1, MAX, GATA1, DACH1, GMEB1, TLE3, ZNF592, NR3C1, L3MBTL2, USF2, EVI1, PHOX2B, USF1, MNT, AR, DPF2, GATA2, GATAD2B, CREB3, MYNN, MXI1, BRD4, JUND, EP400, MLLT1
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 8
- Number of somatic mutations (non-coding): 0
- Related genes and loops