- Basic information
- CohesinDB ID: CDBP00414517
- Locus: chr21-21167551-21167749
-
Data sourse: GSE62063
-
Cell type: Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
27% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 85%,
"9_Het": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: PIAS1, TP53
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 1
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000154654,
- Related loop:
chr21:21000000-21025000~~chr21:21150000-21175000,
chr21:21150000-21175000~~chr21:21300000-21325000,
chr21:21150000-21175000~~chr21:21350000-21375000,
chr21:21150000-21175000~~chr21:21675000-21700000,
chr21:21150000-21175000~~chr21:21900000-21925000,
chr21:21150000-21175000~~chr21:21925000-21950000,
chr21:21150000-21175000~~chr21:22775000-22800000,
chr21:21150000-21175000~~chr21:25375000-25400000,
chr21:21162538-21166096~~chr21:21372954-21374952,
chr21:21162538-21166096~~chr21:21920932-21923125,
chr21:21162657-21165063~~chr21:21687931-21690091,
chr21:21163026-21165402~~chr21:21920972-21923111,
chr21:21163031-21165075~~chr21:21920929-21923014,
chr21:21163052-21166114~~chr21:21372959-21374950,
chr21:21163052-21166114~~chr21:21687901-21690144,
chr21:21163062-21164785~~chr21:21921001-21922912,
chr21:21163064-21165959~~chr21:21688044-21689859,
chr21:21163079-21165031~~chr21:21687926-21689834,
chr21:21163085-21165071~~chr21:21688096-21689849,
chr21:21163085-21165071~~chr21:21920925-21923025,
chr21:21163114-21165063~~chr21:21687936-21689865,
chr21:21163114-21165063~~chr21:21920963-21923078,
chr21:21163194-21164851~~chr21:21921005-21922555,
chr21:21163211-21164788~~chr21:21688204-21689703,
chr21:21163279-21165047~~chr21:21687914-21690120,
chr21:21163279-21165047~~chr21:21920950-21923088,
chr21:21163351-21164698~~chr21:21688111-21689755,
chr21:21163353-21164783~~chr21:21920979-21922536,