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Basic information

CohesinDB ID: CDBP00414521

Locus: chr21-21176999-21177311

Data sourse: GSE62063

Cell type: Ramos

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: NIPBL

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: False

Compartment: 27% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 91%, "5_TxWk": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: MAFG, ZNF316, HDAC1, MTA2, FOXA1, HNRNPK, HDGF, SMARCA4, CHAMP1, ARID1B, ZNF184, PRDM1, ARNT, GATAD2A, SMARCE1, MAX, SUPT5H, IKZF1, NFE2, MTA1, GMEB1, THRAP3, KDM5B, C11orf30, NCOA1, PHOX2B, AR, DPF2, HDAC2, GATA2, TRIM24, HSF1, NCOR1, RNF2, SRSF9, SMARCA5, ZNF24, MLLT1, CC2D1A

Target gene symbol (double-evidenced CRMs): NCAM2

Function elements

Human SNPs: .

Number of somatic mutations (coding): 4

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000154654,

eachgene

Deatailed information for cohesin site CDBP00414521