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Basic information

CohesinDB ID: CDBP00414522

Locus: chr21-21178608-21178796

Data sourse: GSE62063

Cell type: Ramos

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: NIPBL

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 27% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 91%, "5_TxWk": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: CBX5, MAFG, HDAC1, CBX3, CREM, ID3, MEIS2, CTBP1, POU4F2, XBP1, MAFF, FOXA1, NBN, PBX2, ARID3A, HOXB13, ZNF300, ZNF318, YY1, KDM1A, IRF2, ERG, TFAP4, SMARCC2, EHMT2, MYC, NFIC, CHAMP1, SMARCA4, ARID1B, ZNF24, CTCFL, ARNT, BACH1, HIF1A, RAD21, OTX2, FOXK2, FOXP2, STAT3, MAX, NR2C1, NFE2, RCOR1, DACH1, SFPQ, GMEB1, TLE3, ZNF592, MAF, NCOA3, TEAD1, CREB1, ETV1, NFE2L2, PIAS1, PKNOX1, C11orf30, SETDB1, PHOX2B, CTCF, MAFK, SPI1, AR, DPF2, GATA2, REST, ATF7, SOX6, RNF2, JUND, BRD4, E2F1, EP400, TEAD4, ATF1, MLLT1, ZNF316

Target gene symbol (double-evidenced CRMs): NCAM2

Function elements

Human SNPs: .

Number of somatic mutations (coding): 3

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000154654,

eachgene

Deatailed information for cohesin site CDBP00414522