- Basic information
- CohesinDB ID: CDBP00414531
- Locus: chr21-21210924-21211070
-
Data sourse: GSE120943, GSE98367
-
Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
27% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 95%,
"9_Het": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: NFIA, PGR, FOXA2, ZNF496, MEIS2, NME2, ESR2, FOXA1, PBX2, NFIC, SMARCA4, ARID1B, PBX4, NKX2-1, GATA3, ZEB2, TAL1, CBFA2T3, PBX3, NRIP1, GATA1, NR3C1, CEBPB, NR2F2, TEAD1, ESR1, PKNOX1, SETDB1, BCL11A, TFAP2A, AR, DPF2, ZNF182, SIX2, SOX6, BRD4, JUND, CUX1, TEAD4
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2
- Number of somatic mutations (non-coding): 0
- Related genes and loops