- Basic information
- CohesinDB ID: CDBP00414532
- Locus: chr21-21216013-21216816
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Data sourse: ENCSR000EHW, ENCSR000EHX, ENCSR000BLY
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Cell type: SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
27% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 84%,
"7_Enh": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, MYCN, CHD2, XBP1, FOXA1, TWIST1, KDM1A, RELA, NEUROD1, ISL1, RAD21, TCF4, HIF1A, ARNT, OTX2, GATA3, PRDM9, GABPA, SUPT5H, RCOR1, HAND2, MED1, TEAD1, NEUROG2, ESR1, PITX3, GRHL2, ZNF334, SETDB1, EBF3, PHOX2B, TCF12, EP300, AR, GATA2, REST, MAML3, BRD4, TEAD4, AHR
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 12
- Number of somatic mutations (non-coding): 0
- Related genes and loops