- Basic information
- CohesinDB ID: CDBP00414533
- Locus: chr21-21230014-21230340
-
Data sourse: GSE62063
-
Cell type: Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
27% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 93%,
"5_TxWk": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 11
- Number of somatic mutations (non-coding): 11
- Related genes and loops
- Related gene:
ENSG00000154654,
- Related loop:
chr21:21225000-21250000~~chr21:21350000-21375000,
chr21:21225000-21250000~~chr21:21450000-21475000,
chr21:21225000-21250000~~chr21:21475000-21500000,
chr21:21225000-21250000~~chr21:21500000-21525000,
chr21:21225000-21250000~~chr21:21600000-21625000,
chr21:21225000-21250000~~chr21:21675000-21700000,
chr21:21225000-21250000~~chr21:21900000-21925000,
chr21:21225000-21250000~~chr21:22100000-22125000,
chr21:21225000-21250000~~chr21:22525000-22550000,
chr21:21225000-21250000~~chr21:22775000-22800000,
chr21:21225000-21250000~~chr21:22875000-22900000,
chr21:21225000-21250000~~chr21:23375000-23400000,
chr21:21231430-21233404~~chr21:21920936-21923160,
chr21:21231477-21233381~~chr21:21687907-21690091,
chr21:21231521-21233402~~chr21:21687901-21690144,
chr21:21231528-21233140~~chr21:21688144-21689874,
chr21:21231535-21233401~~chr21:21687936-21689865,
chr21:21231535-21233401~~chr21:21920963-21923078,
chr21:21231535-21233410~~chr21:21920932-21923125,
chr21:21231541-21233362~~chr21:21920929-21923014,
chr21:21231560-21233379~~chr21:21687926-21689834,
chr21:21231560-21233379~~chr21:21920967-21923026,
chr21:21231567-21233381~~chr21:21921006-21922867,
chr21:21231594-21233378~~chr21:21688096-21689849,
chr21:21231694-21233389~~chr21:21687914-21690120,
chr21:21231694-21233389~~chr21:21920950-21923088,
chr21:21231825-21233156~~chr21:21921005-21922555,
chr21:21231867-21233358~~chr21:21688020-21689825,
chr21:21231867-21233358~~chr21:21921063-21923124,
chr21:21231916-21233147~~chr21:21688044-21689859,