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Basic information

CohesinDB ID: CDBP00414536

Locus: chr21-21237497-21237840

Data sourse: GSE62063

Cell type: Ramos

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: NIPBL

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 27% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 95%, "9_Het": 4%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: PGR, MAFG, FOXA2, DUX4, MAFF, FOXA1, ERG, RELA, MEN1, NEUROD1, GR, LHX2, GRHL3, OTX2, GATA3, GABPA, STAT3, MAX, TEAD1, ETV1, PIAS1, ESR1, C11orf30, SETDB1, TRPS1, PHOX2B, CTCF, NUP98-HOXA9, MAFK, EP300, BAF155, AR, GATA2, FLI1, BRD4, JUND, ZNF316

Target gene symbol (double-evidenced CRMs): NCAM2

Function elements

Human SNPs: .

Number of somatic mutations (coding): 2

Number of somatic mutations (non-coding): 2

Related genes and loops

Related gene: ENSG00000154654,

eachgene

Deatailed information for cohesin site CDBP00414536