Deatailed information for cohesin site CDBP00414542
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- Basic information
- CohesinDB ID: CDBP00414542
- Locus: chr21-21258567-21259118
- Data sourse: GSE206145-NatGen2015, GSE67783, GSE86191
- Cell type: Fibroblast, HCT-116, HSPC
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2
- CTCF binding site: CTCF CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
- Compartment: 24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 73%,
"9_Het": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: POU2F2, CHD8, CEBPA, MYCN, BRD3, ZFX, XBP1, MAFF, ZBTB48, WT1, ZSCAN5A, YY1, RELA, EZH1, MYC, CDK6, GRHL3, HIF1A, ARNT, SUPT5H, ZNF143, SFPQ, NCOA3, EZH2, ESR1, ZNF334, CTCF, JUN, SPI1, GSPT2, AR, TAF1, NOTCH3, E2F1, MAZ, SMC3, STAG1, ZNF316
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 11
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene: ENSG00000154654,
- Related loop: chr21:21250000-21275000~~chr21:21650000-21675000,
Tools:
- Assay
