- Basic information
- CohesinDB ID: CDBP00414543
- Locus: chr21-21259876-21260008
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Data sourse: GSE120943, GSE98367
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Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 83%,
"9_Het": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, CHD8, CEBPA, MYCN, BRD3, ZFX, XBP1, MAFF, ZBTB48, WT1, ZSCAN5A, YY1, RELA, EZH1, MYC, CDK6, GRHL3, HIF1A, ARNT, SUPT5H, ZNF143, SFPQ, NCOA3, EZH2, ESR1, ZNF334, CTCF, JUN, SPI1, GSPT2, AR, TAF1, NOTCH3, E2F1, MAZ, SMC3, STAG1, ZNF316
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 1
- Number of somatic mutations (non-coding): 0
- Related genes and loops