- Basic information
- CohesinDB ID: CDBP00414561
- Locus: chr21-21315193-21315849
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Data sourse: ENCSR703TNG, GSE206145-GSE177045, GSE72082
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 91%,
"9_Het": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, POU2F2, PGR, FOXA2, SIN3A, TEAD4, CTBP1, XBP1, DUX4, FOXA1, MLLT3, HOXB13, ERG, RELA, CREBBP, LYL1, AHR, RAD21, GRHL3, GATA3, GABPA, TAL1, NRIP1, IKZF1, MED1, NR3C1, CEBPB, NCOA3, NR2F2, PML, TEAD1, ETV1, TCF7L2, PIAS1, ZNF217, ESR1, LMO2, EVI1, TRPS1, TCF12, EP300, BAF155, AR, GATA6, GATA2, FLI1, ASH2L, HSF1, CTBP2, MBD2, FOXP1, NCOA2, TFAP2C
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 12
- Number of somatic mutations (non-coding): 0
- Related genes and loops