- Basic information
- CohesinDB ID: CDBP00414563
- Locus: chr21-21323820-21324668
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Data sourse: ENCSR000BLD, ENCSR000BTQ, GSE206145-GSE177045, ENCSR230ZWH, ENCSR000BKV, GSE72082, GSE25021, ENCSR000BLY, GSE105028, ENCSR000ECE, ENCSR000EHX, GSE68388, ENCSR703TNG, GSE106870, GSE108869, GSE97394, ENCSR917QNE
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Cell type: MCF-7, H1-hESC, HeLa-S3, HUES64, K-562, SK-N-SH, CVI-hiPSC, Liver, HuCC-T1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 6% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.889
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 92%,
"9_Het": 4%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, ZXDC, CREBBP, NR3C1, HOXB13, GATA2, TEAD1, PIAS1, ISL1, GRHL3, ESR1, ARNT, C11orf30, FOXA1, GATA3, MAFK, TEAD4, TBX2, GATA1, EP300
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 186
- Number of somatic mutations (non-coding): 0
- Related genes and loops