- Basic information
- CohesinDB ID: CDBP00414565
- Locus: chr21-21331740-21332194
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Data sourse: GSE67783
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Cell type: HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 87%,
"9_Het": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CBFA2T2, CHD8, HDAC1, POU5F1, TOP2A, ZFX, MTA2, XBP1, STAT1, FOXA1, ZNF300, ERG, NFIC, SMARCA4, ARID1B, ARNT, TFDP1, ATF4, GABPA, TAL1, CBFA2T3, PAX5, MAX, GATA1, RCOR1, VDR, NR3C1, NR2F2, TRIM28, CEBPD, CREB1, NEUROG2, ESR1, STAT5A, CTCF, TCF12, DPF2, HDAC2, GATA2, ZBTB7A, REST, TRIM24, NCOR1, BRD4, CUX1, TEAD4, MLLT1
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops