- Basic information
- CohesinDB ID: CDBP00414567
- Locus: chr21-21335462-21336404
-
Data sourse: ENCSR703TNG, GSE206145-GSE177045, GSE76893
-
Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL,Rad21,Mau2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 92%,
"5_TxWk": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: PGR, SIN3A, FOXA1, HOXB13, ERG, HNRNPK, RELA, CREBBP, MEN1, GATA3, ATF2, NKX3-1, MED1, VDR, TLE3, NR3C1, ESRRA, TEAD1, NR2F2, CREB1, NR2F1, PIAS1, ETV1, ESR1, ZHX2, TCF12, NIPBL, SPI1, BAF155, EP300, AR, GATA2, ARID1A, BRD4, JUND
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 124
- Number of somatic mutations (non-coding): 0
- Related genes and loops