- Basic information
- CohesinDB ID: CDBP00414590
- Locus: chr21-21397231-21397918
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Data sourse: GSE206145-NatGen2015, GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, Fibroblast, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"9_Het": 55%,
"15_Quies": 38%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, TRP47, POU2F2, CBX1, CHD8, SMC1A, MYCN, POU5F1, KDM4C, ZFX, POU4F2, XBP1, ZBTB48, WT1, FOXA1, TET2, ZBTB33, MLLT3, ERG, RELA, ATF3, MYC, SP140, GRHL3, ZFP36, HIF1A, GATA3, STAT3, TP63, SUPT5H, NCOA3, TRIM28, ZNF680, PIAS1, EZH2, ZNF3, ESR1, TP53, OCA2, SETDB1, CTCF, RBM22, SPI1, ARRB1, GSPT2, AR, TRIM24, ZSCAN29, MYNN, HSF1, NOTCH3, BRD4, HNRNPLL, E2F1, MAZ, HCFC1R1, SMC3, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 28
- Number of somatic mutations (non-coding): 0
- Related genes and loops