- Basic information
- CohesinDB ID: CDBP00414601
- Locus: chr21-21436028-21436644
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Data sourse: GSE138405, GSE62063, ENCSR000BLY, GSE138105
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Cell type: SLK, Hela-Kyoto, SK-N-SH, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: NIPBL,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 85%,
"5_TxWk": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, PGR, PPARG, FOXA2, NME2, FOXA1, HOXC5, RELA, JUNB, ONECUT1, ISL1, RAD21, GRHL3, PBX4, NKX2-1, GATA3, STAT3, PBX3, FOS, GATA1, HAND2, MED1, NR3C1, CEBPB, CEBPD, TP53, EBF3, PHOX2B, JUN, TCF12, EP300, IRF1, GATA2, FLI1, BRD4, JUND, TEAD4, FOSL2
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 12
- Number of somatic mutations (non-coding): 0
- Related genes and loops