- Basic information
- CohesinDB ID: CDBP00414610
- Locus: chr21-21458100-21458506
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Data sourse: ENCSR000BLD, GSE67783, GSE86191, GSE105028, ENCSR153HNT
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Cell type: H1-hESC, HCT-116, K-562, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 77%,
"9_Het": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, SMC1A, TBL1X, ZNF263, POU5F1, MYCN, SOX2, ZFX, POU4F2, XBP1, ZBTB48, WT1, FOXA1, TET2, HOXB13, TBP, ERG, RELA, ATF3, MYC, RAD21, SP140, GRHL3, HIF1A, ARNT, ZNF143, VDR, ZEB1, EZH2, ESR1, GRHL2, CTCF, RBM22, AR, NOTCH3, BRD4, E2F1, SMC3, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2
- Number of somatic mutations (non-coding): 0
- Related genes and loops