- Basic information
- CohesinDB ID: CDBP00414637
- Locus: chr21-21547562-21547890
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Data sourse: GSE62063, ENCSR000BLY
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Cell type: SK-N-SH, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: NIPBL,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 89%,
"9_Het": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, MAFG, MEIS2, MAFF, MLLT3, MEF2C, PBX2, CDK9, ERG, CREBBP, ATF3, ATF4, GATA3, TAL1, STAT3, GATA1, CDK8, MED1, VDR, JMJD1C, CEBPB, MYB, LMO2, C11orf30, MAFK, SPI1, IRF1, ZBTB16, GATA2, IRF4, ATF7, BRD4, JUND, KMT2B, ZNF316
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 8
- Related genes and loops