- Basic information
- CohesinDB ID: CDBP00414646
- Locus: chr21-21624671-21625381
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Data sourse: GSE206145-NatGen2015, GSE62063, ENCSR000BLY
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Cell type: Fibroblast, SK-N-SH, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: NIPBL,Rad21,Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 89%,
"7_Enh": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, EZH2phosphoT487, SOX2, DUX4, RUNX2, RAD21, LHX2, ARNT, ISL1, GATA3, STAT3, PBX3, NR3C1, CEBPB, NR2F2, MYOD1, EBF3, PHOX2B, TCF12, NUP98-HOXA9, EP300, GATA2, JUND, TEAD4, FOSL2
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops