- Basic information
- CohesinDB ID: CDBP00414658
- Locus: chr21-21694211-21694449
-
Data sourse: ENCSR000BLY
-
Cell type: SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 94%,
"9_Het": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: AR, RAD21, GRHL3, EBF3, PHOX2B
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000154654,
- Related loop:
chr21:20998668-21000692~~chr21:21687936-21689865,
chr21:20998732-21000680~~chr21:21688116-21689848,
chr21:20998901-21000721~~chr21:21688167-21689840,
chr21:20998915-21000754~~chr21:21688092-21689865,
chr21:20998922-21001330~~chr21:21687914-21690146,
chr21:20998952-21000882~~chr21:21687901-21690144,
chr21:20998995-21000797~~chr21:21688096-21689849,
chr21:20999019-21000705~~chr21:21688236-21689710,
chr21:20999019-21000835~~chr21:21688505-21689670,
chr21:20999120-21000650~~chr21:21688176-21689721,
chr21:21000000-21025000~~chr21:21675000-21700000,
chr21:21003058-21004646~~chr21:21688144-21689874,
chr21:21003101-21004721~~chr21:21688167-21689840,
chr21:21003137-21004624~~chr21:21688096-21689849,
chr21:21003151-21004646~~chr21:21687901-21690144,
chr21:21003163-21004635~~chr21:21687914-21690146,
chr21:21003264-21004580~~chr21:21687914-21690120,
chr21:21150000-21175000~~chr21:21675000-21700000,
chr21:21162657-21165063~~chr21:21687931-21690091,
chr21:21163052-21166114~~chr21:21687901-21690144,
chr21:21163064-21165959~~chr21:21688044-21689859,
chr21:21163079-21165031~~chr21:21687926-21689834,
chr21:21163085-21165071~~chr21:21688096-21689849,
chr21:21163114-21165063~~chr21:21687936-21689865,
chr21:21163211-21164788~~chr21:21688204-21689703,
chr21:21163279-21165047~~chr21:21687914-21690120,
chr21:21163351-21164698~~chr21:21688111-21689755,
chr21:21175000-21200000~~chr21:21675000-21700000,
chr21:21225000-21250000~~chr21:21675000-21700000,
chr21:21231477-21233381~~chr21:21687907-21690091,
chr21:21231521-21233402~~chr21:21687901-21690144,
chr21:21231528-21233140~~chr21:21688144-21689874,
chr21:21231535-21233401~~chr21:21687936-21689865,
chr21:21231560-21233379~~chr21:21687926-21689834,
chr21:21231594-21233378~~chr21:21688096-21689849,
chr21:21231694-21233389~~chr21:21687914-21690120,
chr21:21231867-21233358~~chr21:21688020-21689825,
chr21:21231916-21233147~~chr21:21688044-21689859,
chr21:21350000-21375000~~chr21:21675000-21700000,
chr21:21500000-21525000~~chr21:21675000-21700000,
chr21:21675000-21700000~~chr21:21900000-21925000,
chr21:21675000-21700000~~chr21:22100000-22125000,
chr21:21675000-21700000~~chr21:22775000-22800000,