- Basic information
- CohesinDB ID: CDBP00414662
- Locus: chr21-21704296-21705266
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Data sourse: GSE62063, GSE67783
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Cell type: HSPC, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: NIPBL,SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 98%,
"9_Het": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PHOX2B, HOXB13, GATA1
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 11
- Related genes and loops
- Related gene:
ENSG00000154654,
- Related loop:
chr21:14975000-15000000~~chr21:21700000-21725000,
chr21:21000000-21025000~~chr21:21675000-21700000,
chr21:21150000-21175000~~chr21:21675000-21700000,
chr21:21175000-21200000~~chr21:21675000-21700000,
chr21:21175000-21200000~~chr21:21700000-21725000,
chr21:21225000-21250000~~chr21:21675000-21700000,
chr21:21350000-21375000~~chr21:21675000-21700000,
chr21:21500000-21525000~~chr21:21675000-21700000,
chr21:21675000-21700000~~chr21:21900000-21925000,
chr21:21675000-21700000~~chr21:22100000-22125000,
chr21:21675000-21700000~~chr21:22775000-22800000,
chr21:21700000-21725000~~chr21:21900000-21925000,
chr21:21700000-21725000~~chr21:22100000-22125000,
chr21:21700000-21725000~~chr21:25350000-25375000,