- Basic information
- CohesinDB ID: CDBP00414664
- Locus: chr21-21711978-21716623
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Data sourse: ENCSR000EFJ, GSE138405, GSE126634, ENCSR000BLY, GSE152721, GSE62063, GSE206145-NatGen2015, ENCSR198ZYJ, ENCSR000EHX, GSE138105, GSE126990, GSE165895
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Cell type: Hela-Kyoto, Fibroblast, Neurons-H1, SLK, Ramos, IMR-90, SK-N-SH, HAP1, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 6% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 69%,
"7_Enh": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, ARNTL, CEBPB, REST, RUNX2, SOX2, HIF1A, GTF2B, BRD4, STAT3, ERG
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 60
- Related genes and loops