- Basic information
- CohesinDB ID: CDBP00414670
- Locus: chr21-21739889-21740765
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Data sourse: GSE138405, GSE126990
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Cell type: Hela-Kyoto
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 92%,
"9_Het": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, NANOG, MYCN, XBP1, DUX4, FOXA1, HOXB13, TWIST1, ERG, RELA, ZNF384, NFIC, PBX4, RXRA, GATA3, PBX3, MAX, NKX3-1, GATA1, TEAD1, PIAS1, ESR1, JUN, TCF12, BAF155, EP300, AR, GATA2, BRD4, JUND, CTBP2, TEAD4, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops